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稲垣 祐司

Inagaki, Yuji

計算科学研究センター , 教授
Center for Computational Sciences , Professor

http://sites.google.com/site/yujiswebsite/Home

原始的ミトコンドリアDNA複製酵素の発見

2024-02-22

稲垣 祐司
ムカデ寄生虫に葉緑体の痕跡を発見！〜進化過程で失われた光合成機能〜

2021-06-15

稲垣 祐司
#032：真核生物の起源を辿る 計算科学で埋めていく進化のパズルのピース

2021-01-13

稲垣 祐司
A new model for studying organelle formation

2020-09-30

稲垣 祐司
藻類の葉緑体が成立する途中段階を発見

2020-05-19

稲垣 祐司 石田 健一郎
海洋微生物と共生するシアノバクテリアは 広く海洋に分布する「見逃された」系統だった 単細胞ゲノム解析により判明

2019-10-08

稲垣 祐司 稲葉 一男 柴 小菊
ミトコンドリア・葉緑体に次ぐ第三の共生オルガネラか？ ～“光合成しない”光合成細菌のゲノム解読に成功～

2015-12-29

稲垣 祐司
  1. 1. A hidden archaeal lineage with an ultra-reduced genome retaining only its replicative core. Ryo, Harada; Yuki, Nishimura; Mami, Nomura; Akinori, Yabuki (+4 著者) Nakayama, Takuro
      CURRENT BIOLOGY 36: 1 (2026)
  2. 2. Evolution of form I-related RuBisCOs revisited: Uncertainties and diversity encompassing Bacteria and Archaea. Bamba, Kohei; Yazaki, Euki; Nakayama, Takuro; INAGAKI, Yuji
      bioRχiv (2026)
  3. 3. Recent plastid replacement in Karlodinium ballantinum (Kareniaceae, Dinoflagellata) challenges the paradigms of endosymbiotic gene transfer. Maciszewski, Kacper; Takahashi, Kazuya; Harada, Ryo; Inga, Martinek (+3 著者) Hehenberger, Elisabeth
      MOLECULAR BIOLOGY AND EVOLUTION 43: msag166 (2026)
  4. 4. tArp Is an Actin-Related Protein Required for Ciliary Function That Is Conserved in Ciliates and Related Eukaryotic Groups Kagawa, Miku; Hagita, Minori; Nakayama, Takuro; Shiba, Kogiku (+4 著者) Nakano, Kentaro
      The Journal of eukaryotic microbiology 73: (2026) Semantic Scholar
  5. 5. Morphology, ultrastructure, and classification of barthelonids (Metamonada incertae sedis): with description of Microbarthelona gen. nov., and Parabarthelona gen. nov. Takashi, Shiratori; Yana, Egli; Euki, Yazaki; INAGAKI, Yuji (+1 著者) Simpson Alastair
      Journal of Eukaryotic Micobiology 73: e70080 (2026)
  6. 6. Colponemidia questions the ancestry of an ATG10-lacking ATG8-ATG12 conjugation system in Alveolata. Yazaki, Euki; Isogai, Ryu; INAGAKI, Yuji
      Journal of Protistology 57: e008 (2026)
  7. 7. Diversity and evolution of DNA polymerase θ in eukaryotes and the origin of mitochondrion-localized DNA polymerase PolIA in Euglenozoa. Ryu, Isogai; Mingzhe, Wei; Ryo, Harada; Euki, Yazaki (+2 著者) INAGAKI, Yuji
      SSRN 181: 126160 (2026)
  8. 8. A deeply branching lineage in Heterolobosea (Discoba) with multiflagellated and multigrooved life stages. Prokina; Kristina I.; Yubuki, Naoji; Galindo, Luis Javier (+4 著者) Moreira, David
      Journal of Eukaryotic Micobiology 72: e70037 (2025)
  9. 9. Protists with uncertain phylogenetic affiliations for resolving the deep tree of eukaryotes. Yazaki, Euki; Shiratori, Takashi; INAGAKI, Yuji
      Microorganisms 13: 1926 (2025)
  10. 10. Protists with Uncertain Phylogenetic Affiliations for Resolving the Deep Tree of Eukaryotes Euki, Yazaki; Takashi, Shiratori; Yuji, Inagaki
      Microorganisms 13: 1926 (2025) Semantic Scholar
  11. 11. Marked genome reduction driven by a parasitic lifestyle: Two complete genomes of endosymbiotic bacteria possibly hosted by a dinoflagellate. Nakayama, Takuro; Harada, Ryo; Yabuki, Akinori; Nomura, Mami (+2 著者) Inagaki, Yuji
      Microbes and Environments 40: ME250005 (2025) Semantic Scholar
  12. 12. Glissandra oviformis n. sp.: a novel predatory flagellate illuminates the character evolution within the eukaryotic clade CRuMs. Yazaki, Euki; Harada, Ryo; Isogai, Ryu; Bamba, Kohei (+2 著者) Shiratori, Takashi
      Open Biology 15: 250057 (2025)
  13. 13. Phylogenetic dissection provides insights into the incongruity in the tree of Archaeplastida between the analyses of nucleus- and plastid-encoded proteins. Ryu, Isogai; Ryo, Harada; Takuro, Nakayama; INAGAKI, Yuji
      bioRχiv (2025) Semantic Scholar
  14. 14. A cellular entity retaining only its replicative core: Hidden archaeal lineage with an ultra-reduced genome. Ryo, Harada; Yuki, Nishimura; Mami, Nomura; Akinori, Yabuki (+3 著者) Takuro, Nakayama
      bioRχiv (2025)
  15. 15. Complete mitochondrial genomes of ancyromonads provide clues for the gene content and genome structures of ancestral mitochondria. Harada, Ryo; Shiratori, Takashi; Yabuki, Akinori; INAGAKI, Yuji (+1 著者) Kamikawa, Ryoma
      bioRχiv 72: e70012 (2025)
  16. 16. An expanded phylogenomic analysis of Heterolobosea reveals the deep relationships, non-canonical genetic codes, and cryptic flagellate stages in the group. Pánek, Tomáš; Tice, Alexander K.; Corre, Pia; Hrubá, Pavla (+13 著者) Čepička, Ivan
      Molecular Phylogenetics and Evolution 204: 108289 (2025)
  17. 17. Drastic genome reduction driven by parasitic lifestyle: Two complete genomes of endosymbiotic bacteria possibly hosted by a dinoflagellate. Nakayama, Takuro; Harada, Ryo; Yabuki, Akinori; Nomura, Mami (+2 著者) Inagaki, Yuji
      bioRχiv (2025) Semantic Scholar
  18. 18. AUTOEB: A software for systematically evaluating bipartitions in a phylogenetic tree employing an approximately unbiased test. Kohei, Bamba; Ryo, Harada; INAGAKI, Yuji
      IPSJ Transactions on Bioinformatics 17: 72 (2024) Semantic Scholar
  19. 19. オルガネラ局在DNAポリメラーゼの多様性と進化：現状とこれからの課題． 稲垣, 祐司; 原田亮
      月刊アグリバイオ 8: 43 (2024)
  20. 20. Dinotoms possess two evolutionary distinct autophagy-related ubiquitin-like conjugation systems. Yazaki, Euki; Uehara, Tadaaki; Sakaoto, Hirokazu; Inagaki, Yuji
      Protist 175: 126067 (2024) Semantic Scholar
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  1. 1. 共生微生物 稲垣,祐司; 中山卓郎 (担当:分担執筆, 範囲:第17章 現在も続く細胞内共生細菌のオルガネラ化．)
    化学同人 2016年10月 (ISBN: 9784759817287)
  2. 2. Reference modules in Materials Science and Engineering 2016 Harada, Ryuhei; Inagaki, Yuji; Shigeta, Yasuteru (担当:分担執筆, 範囲:Protein Folding and Evolution)
    2016年6月
  3. 3. ロングブランチの誘惑--分子系統解析のダークサイド 稲垣祐司 (担当:監修)
    藻類 2007年7月
  4. 4. アピコンプレクサ類の退化葉緑体は緑藻起源か？ 稲垣祐司 (担当:監修)
    藻類 2004年1月

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