ホーム > 稲垣 祐司/ Inagaki, Yuji

稲垣 祐司

Inagaki, Yuji

計算科学研究センター , 教授
Center for Computational Sciences , Professor

http://sites.google.com/site/yujiswebsite/Home

原始的ミトコンドリアDNA複製酵素の発見

2024-02-22

稲垣 祐司
ムカデ寄生虫に葉緑体の痕跡を発見！〜進化過程で失われた光合成機能〜

2021-06-15

稲垣 祐司
#032：真核生物の起源を辿る 計算科学で埋めていく進化のパズルのピース

2021-01-13

稲垣 祐司
A new model for studying organelle formation

2020-09-30

稲垣 祐司
藻類の葉緑体が成立する途中段階を発見

2020-05-19

稲垣 祐司 石田 健一郎
海洋微生物と共生するシアノバクテリアは 広く海洋に分布する「見逃された」系統だった 単細胞ゲノム解析により判明

2019-10-08

稲垣 祐司 稲葉 一男 柴 小菊
ミトコンドリア・葉緑体に次ぐ第三の共生オルガネラか？ ～“光合成しない”光合成細菌のゲノム解読に成功～

2015-12-29

稲垣 祐司
オープンアクセス版の論文は「つくばリポジトリ」で読むことができます。
  1. 1. Glissandra oviformis n. sp.: a novel predatory flagellate illuminates the character evolution within the eukaryotic clade CRuMs. Euki, Yazaki; Ryo, Harada; Ryu, Isogai; Kohei, Bamba (+2 著者) Shiratori, Takashi
      Open Biology 15: 250057 (2025)
  2. 2. Marked genome reduction driven by a parasitic lifestyle: Two complete genomes of endosymbiotic bacteria possibly hosted by a dinoflagellate. Nakayama, Takuro; Harada, Ryo; Yabuki, Akinori; Nomura, Mami (+2 著者) Inagaki, Yuji
      Microbes and Environments 40: ME250005 (2025)
  3. 3. Complete mitochondrial genomes of ancyromonads provide clues for the gene content and genome structures of ancestral mitochondria. Harada, Ryo; Shiratori, Takashi; Yabuki, Akinori; INAGAKI, Yuji (+1 著者) Kamikawa, Ryoma
      Journal of Eukaryotic Micobiology 72: e70012 (2025)
  4. 4. Phylogenetic dissection provides insights into the incongruity in the tree of Archaeplastida between the analyses of nucleus- and plastid-encoded proteins. Ryu, Isogai; Ryo, Harada; Takuro, Nakayama; INAGAKI, Yuji
      bioRχiv (2025)
  5. 5. A cellular entity retaining only its replicative core: Hidden archaeal lineage with an ultra-reduced genome. Ryo, Harada; Yuki, Nishimura; Mami, Nomura; Akinori, Yabuki (+3 著者) Takuro, Nakayama
      bioRχiv (2025)
  6. 6. An expanded phylogenomic analysis of Heterolobosea reveals the deep relationships, non-canonical genetic codes, and cryptic flagellate stages in the group. Pánek, Tomáš; Tice, Alexander K.; Corre, Pia; Hrubá, Pavla (+13 著者) Čepička, Ivan
      Molecular Phylogenetics and Evolution 204: 108289 (2025)
  7. 7. Drastic genome reduction driven by parasitic lifestyle: Two complete genomes of endosymbiotic bacteria possibly hosted by a dinoflagellate. Nakayama, Takuro; Harada, Ryo; Yabuki, Akinori; Nomura, Mami (+2 著者) Inagaki, Yuji
      bioRχiv (2025) Semantic Scholar
  8. 8. AUTOEB: A software for systematically evaluating bipartitions in a phylogenetic tree employing an approximately unbiased test. Kohei, Bamba; Ryo, Harada; INAGAKI, Yuji
      IPSJ Transactions on Bioinformatics 17: 72 (2024) Semantic Scholar
  9. 9. Dinotoms possess two evolutionary distinct autophagy-related ubiquitin-like conjugation systems. Yazaki, Euki; Uehara, Tadaaki; Sakaoto, Hirokazu; Inagaki, Yuji
      Protist 175: 126067 (2024) Semantic Scholar
  10. 10. オルガネラ局在DNAポリメラーゼの多様性と進化：現状とこれからの課題． 稲垣, 祐司; 原田亮
      月刊アグリバイオ 8: 43 (2024)
  11. 11. 新奇DNAポリメラーゼrdxPolAは、古のミトコンドリアDNA維持装置の遺産か？ 原田亮; 稲垣, 祐司
      The Japanese Journal of Phycology (Sôrui) 72: 104 (2024)
  12. 12. Convergent reductive evolution of cyanobacteria in symbiosis with Dinophysiales dinoflagellates Takuro Nakayama; Mami Nomura; Akinori Yabuki; Kogiku Shiba (+1 著者) Yuji Inagaki
      Scientific Reports 14: 12774 (2024) Semantic Scholar
  13. 13. Gleaning Euglenozoa-specific DNA polymerases in public single-cell transcriptome data Harada, Ryo; Inagaki, Yuji
      PROTIST 174: 125997 (2023) Semantic Scholar
  14. 14. Transcriptome data sets of free-living diplomonads, Treponema sp, and Hexamita sp. Kume, Keitaro; Tsubasa, Gen; Kazuki, Abe; Hiroshi, Komatsuzaki (+4 著者) Hashimoto, Tetsuo
      MICROBIOLOGY RESOURCE ANNOUNCEMENTS 12: e0050623 (2023) Semantic Scholar
  15. 15. Encyclopaedia of family A DNA polymerases localized in organelles: Evolutionary contribution of diverse bacteria including the proto-mitochodrion. Harada, Ryo; Hirakawa, Yoshihisa; Yabuki, Akinori; Kim, Eunsoo (+4 著者) Inagaki, Yuji
      Molecular Biology and Evolution 41: msae014 (2023) Semantic Scholar
  16. 16. AtLASS: A scheme for end-to-end prediction of splice sites using attention-based bi-LSTM. Harada, Ryo; Kume, Keitaro; Horie, Kazumasa; Nakayama, Takuro (+1 著者) Amagasa, Toshiyuki
      IPSJ Transactions on Bioinformatics 16: 20 (2023) Semantic Scholar
  17. 17. 遺伝子水平伝播が支配するオルガネラ局在ファミリーA DNAポリメラーゼの進化 原田亮; 稲垣, 祐司
      月刊 細胞 55: 33 (2023)
  18. 18. Fascinating strategies of marine organisms to cope with coming pollutant: Titanium dioxide nanoparticles. Ishitani, Yoshiyuki; Ciacci, Caterina; Ujiié, Yurika; Tame, Akihiro (+3 著者) Frontalini, Fabrizio
      ENVIRONMENTAL POLLUTION 330: 121538 (2023) Semantic Scholar
  19. 19. Draft genome sequence of Aduncisulcus paluster, a free-living microaerophilic eukaryote belonging to Fornicata. Ikuko, Yuyama; Kume, Keitaro; Tamura, Takumi; Inagaki, YujiHashimoto, Tetsuo
      Microbiology Resource Announcements 12: e0053922 (2023) Semantic Scholar
  20. 20. Microheliella maris possesses the most gene-rich mitochondrial genomes in Diaphoretickes. Yazaki, Euki; Yabuki, Akinori; Nishimura, Yuki; Shiratori, TakashiInagaki, Yuji
      Frontiers in Ecology and Evolution 10: 1030570 (2022) Semantic Scholar
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  1. 1. 共生微生物 稲垣,祐司; 中山卓郎 (担当:分担執筆, 範囲:第17章 現在も続く細胞内共生細菌のオルガネラ化．)
    化学同人 2016年10月 (ISBN: 9784759817287)
  2. 2. Reference modules in Materials Science and Engineering 2016 Harada, Ryuhei; Inagaki, Yuji; Shigeta, Yasuteru (担当:分担執筆, 範囲:Protein Folding and Evolution)
    2016年6月
  3. 3. ロングブランチの誘惑--分子系統解析のダークサイド 稲垣祐司 (担当:監修)
    藻類 2007年7月
  4. 4. アピコンプレクサ類の退化葉緑体は緑藻起源か？ 稲垣祐司 (担当:監修)
    藻類 2004年1月

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