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永久保利紀

Nagakubo, Toshiki

生命環境系 , 助教
Department of Life and Environmental Sciences , Assistant Professor

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1. A phage-derived reconfigurable effector associated with an actinobacterial contractile nanomachine tailors bacterial responses to competition Toshiki Nagakubo; Tatsuya Nishiyama; Shumpei Asamizu; Hiroyasu Onaka (+1 著者) Masanori Toyofuku
Journal of Bacteriology 0:e00532-25 (2026) Semantic Scholar
2. Restoration of Nitrate Respiration in Pseudomonas aeruginosa under Growth Limitations. Ayaka Uehara; Chunqi Jiang; Susumu Yoshizawa; Kazuhiro Kogure (+2 著者) Masanori Toyofuku
Microbes and environments 41: (2026) Semantic Scholar
3. A phage-derived reconfigurable effector associated with an actinobacterial contractile nanomachine tailors bacterial responses to competition Toshiki Nagakubo; Tatsuya Nishiyama; Shumpei Asamizu; Hiroyasu Onaka (+1 著者) Masanori Toyofuku
bioRxiv (2025) Semantic Scholar
4. Contractile injections systems facilitate sporogenic differentiation of Streptomyces davawensis through the action of a phage tapemeasure protein-related effector Nagakubo, T.; Nishiyama, T.; Yamamoto, T.; Nomura, N.Toyofuku, M.
Nature Communications 15: 4442 (2024)
5. Predicted protein structures Toshiki Nagakubo
(2024)
6. Contractile injection systems facilitate sporogenic differentiation of bacteria through the action of a phage tapemeasure protein-related effector. Toshiki Nagakubo; Tatsuya Nishiyama; Tatsuya Yamamoto; Nobuhiko NomuraMasanori Toyofuku
(2023)
7. Iron Delivery through Membrane Vesicles in Corynebacterium glutamicum. Kayuki Kawashima (equal contribution); Toshiki Nagakubo (equal contribution); Nobuhiko Nomura; Masanori Toyofuku
Microbiology spectrum e0122223 (2023) Semantic Scholar
8. Intracellular Phage Tail-Like Nanostructures Affect Susceptibility of Streptomyces lividans to Osmotic Stress. Toshiki Nagakubo; Shumpei Asamizu; Tatsuya Yamamoto; Manami Kato (+3 著者) Hiroyasu Onaka
mSphere e0011423 (2023) Semantic Scholar
9. Intracellular phage tail-like nanostructures affect susceptibility of Streptomyces lividans to osmotic stress Toshiki Nagakubo; Shumpei Asamizu; Tatsuya Yamamoto; Manami Kato (+4 著者) Hiroyasu Onaka
in press: (2023) Semantic Scholar
10. Supplemental Material Toshiki Nagakubo
(2023)
11. Iron delivery through membrane vesicles in Corynebacterium glutamicum Kayuki Kawashima (equal contribution); Toshiki Nagakubo (equal contribution); Nobuhiko Nomura; Masanori Toyofuku
in press: (2023)
12. Biological Functions and Applications of Virus-Related Bacterial Nanoparticles: A Review Toshiki Nagakubo
International Journal of Molecular Sciences 23: 2595 (2022) Semantic Scholar
13. Phage Genes Induce Quorum Sensing Signal Release through Membrane Vesicle Formation Marina Yasuda; Tatsuya Yamamoto; Toshiki Nagakubo; Kana Morinaga (+2 著者) Masanori Toyofuku
Microbes and Environments 37: (2022) Semantic Scholar
14. Phage tail‐like nanostructures affect microbial interactions between Streptomyces and fungi Toshiki Nagakubo; Tatsuya Yamamoto; Shumpei Asamizu; Masanori Toyofuku (+1 著者) Hiroyasu Onaka
Scientific reports 11: 20116 (2021) Semantic Scholar
15. Mycolic acid-containing bacteria trigger distinct types of membrane vesicles through different routes. Toshiki Nagakubo; Yuhei O Tahara; Makoto Miyata; Nobuhiko NomuraMasanori Toyofuku
iScience 24: 102015 (2021) Semantic Scholar
16. Synergy between Sophorolipid Biosurfactant and SDS Increases the Efficiency of P. aeruginosa Biofilm Disruption. Bac V G Nguyen; Toshiki Nagakubo; Masanori Toyofuku; Nobuhiko NomuraAndrew S Utada
Langmuir : the ACS journal of surfaces and colloids 36: 6411 (2020) Semantic Scholar
17. Involvement of membrane vesicles in long-chain-AHL delivery in Paracoccus species. Kana Morinaga (equal contribution); Toshiki Nagakubo (equal contribution); Nobuhiko Nomura; Masanori Toyofuku
Environmental microbiology reports 12: 355 (2020) Semantic Scholar
18. Cracking Open Bacterial Membrane Vesicles. Toshiki Nagakubo; Nobuhiko Nomura; Masanori Toyofuku
Frontiers in microbiology 10: 3026 (2020) Semantic Scholar
19. Copper amine oxidases catalyze the oxidative deamination and hydrolysis of cyclic imines Nagakubo, T.; Kumano, T.; Ohta, T.; Hashimoto, Y.Kobayashi, M.
Nature Communications 10: 413 (2019) Semantic Scholar
20. Point Mutations Lead to Increased Levels of c-di-GMP and Phenotypic Changes to the Colony Biofilm Morphology in Alcanivorax borkumensis SK2 Manoj Prasad; Nozomu Obana; Kaori Sakai; Toshiki Nagakubo (+4 著者) Andrew S. Utada
Microbes and Environments 34: 104 (2019) Semantic Scholar

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バイオインダストリー協会 2025年
2. 細菌の多細胞集団構造を制御するファージ様粒子の発見永久保利紀
日本バイオフィルム学会ニュースレターNo.11 2024年10月
3. ウイルス様粒子と共存する土壌微生物たち永久保利紀
アグリバイオ 2023年10月
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日本生物工学会 2021年10月
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バイオインダストリー協会 2021年7月
6. 異なる反応を同一の活性部位が触媒する環状イミン分解酵素永久保利紀
バイオインダストリー協会 2019年7月
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21. Bacterial Metabolism of Hetero-Tricyclic Compound 永久保利紀
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22. ヘテロ三環式化合物を分解する微生物の探索永久保利紀
日本農芸化学会2017年度大会 2017年3月
23. フラボノイドに作用する酵素の発見永久保利紀
第7回醗酵学フォーラム 2016年11月
24. ヘテロ三環式化合物の微生物による分解永久保利紀
第89回日本生化学会大会 2016年9月
25. Screening of microorganisms degrading a plant-derived biologically active compound 永久保利紀
2016 International Symposium on New Frontiers in Microbiology and Biotechnology 2016年6月