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中山 卓郎

Nakayama, Takuro

計算科学研究センター , 助教
Center for Computational Sciences , Assistant Professor

令和4年度 科学技術分野の文部科学大臣表彰 科学技術賞・若手科学者賞
令和4年度 科学技術分野の文部科学大臣表彰 科学技術賞・若手科学者賞

2022-04-20

千葉 滋 坂田（柳元） 麻実子 佐々木 銀河 竹田 一則 脇 貴典 中野 泰伺 中村 貴志 飯塚 里志 金川 哲也 中山 卓郎
2021年度日本植物学会奨励賞 計算科学研究センター　中山 卓郎

2021-09-19

中山 卓郎
オープンアクセス版の論文は「つくばリポジトリ」で読むことができます。
  1. 1. Drastic genome reduction driven by parasitic lifestyle: Two complete genomes of endosymbiotic bacteria possibly hosted by a dinoflagellate. Nakayama, Takuro; Harada, Ryo; Yabuki, Akinori; Nomura, Mami (+2 著者) Inagaki, Yuji
      Microbes and Environments 40: ME250005 (2025) Semantic Scholar
  2. 2. A cellular entity retaining only its replicative core: Hidden archaeal lineage with an ultra-reduced genome. Ryo, Harada; Yuki, Nishimura; Mami, Nomura; Akinori, Yabuki (+3 著者) Takuro, Nakayama
      bioRχiv (2025)
  3. 3. Phylogenetic dissection provides insights into the incongruity in the tree of Archaeplastida between the analyses of nucleus- and plastid-encoded proteins. Ryu, Isogai; Ryo, Harada; Takuro, Nakayama; INAGAKI, Yuji
      bioRχiv (2025)
  4. 4. Convergent reductive evolution of cyanobacteria in symbiosis with Dinophysiales dinoflagellates. Nakayama, Takuro; Nomura, Mami; Yabuki, Akinori; Shiba, Kogiku (+1 著者) Inagaki, Yuji
      Scientific Reports 14: 12774 (2024) Semantic Scholar
  5. 5. Detection of evolutionary conserved and accelerated genomic regions related to adaptation to thermal niches in Anolis lizards Sakamoto, Fuku; Kanamori, Shunsuke; Díaz, Luis M; Cádiz, Antonio (+5 著者) Kawata, Masakado
      ECOLOGY AND EVOLUTION 14: (2024) Semantic Scholar
  6. 6. A practical assembly guideline for genomes with various levels of heterozygosity Takako Mochizuki; Mika Sakamoto; Yasuhiro Tanizawa; Takuro Nakayama (+2 著者) Yasukazu Nakamura
      Briefings in Bioinformatics 24: (2023) Semantic Scholar
  7. 7. Three-dimensional architecture and assembly mechanism of the egg-shaped shell in testate amoeba Paulinella micropora Mami Nomura; Keisuke Ohta; Yukinori Nishigami; Takuro Nakayama (+2 著者) Josephine Galipon
      Frontiers in Cell and Developmental Biology 11: (2023) Semantic Scholar
  8. 8. AtLASS: A scheme for end-to-end prediction of splice sites using attention-based bi-LSTM. Harada, Ryo; Kume, Keitaro; Horie, Kazumasa; Nakayama, Takuro (+1 著者) Amagasa, Toshiyuki
      IPSJ Transactions on Bioinformatics 16: 20 (2023) Semantic Scholar
  9. 9. A novel structural maintenance of chromosomes (SMC)-related protein family specific to Archaea Yoshinaga, Mari; Nakayama, Takuro; Inagaki, Yuji
      FRONTIERS IN MICROBIOLOGY 13: 913088 (2022) Semantic Scholar
  10. 10. Comparative Plastid Genomics of Green-Colored Dinoflagellates Unveils Parallel Genome Compaction and RNA Editing Eriko Matsuo; Kounosuke Morita; Takuro Nakayama; Euki Yazaki (+3 著者) Yuji Inagaki
      Frontiers in Plant Science 13: (2022) Semantic Scholar
  11. 11. Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida Ryoma Kamikawa; Takako Mochizuki; Mika Sakamoto; Yasuhiro Tanizawa (+24 著者) Yasukazu Nakamura
      Science Advances 8: (2022) Semantic Scholar
  12. 12. Rappemonads are haptophyte phytoplankton. Masanobu Kawachi; Takuro Nakayama; Motoki Kayama; Mami Nomura (+7 著者) Ryoma Kamikawa
      Current biology : CB 31: 2395 (2021) Semantic Scholar
  13. 13. Signs of the plastid: Enzymes involved in plastid-localized metabolic pathways in a eugregarine species. Euki Yazaki; Ryosuke Miyata; Yasuhiko Chikami; Ryo Harada (+5 著者) Yuji Inagaki
      Parasitology international 83: 102364 (2021) Semantic Scholar
  14. 14. Detection of genes positively selected in Cuban Anolis lizards that naturally inhabit hot and open areas and currently thrive in urban areas Shunsuke Kanamori; Antonio Cádiz; Luis M. Díaz; Yuu Ishii (+1 著者) Masakado Kawata
      Ecology and Evolution 11: 1719 (2021) Semantic Scholar
  15. 15. Putative genome features of relic green alga-derived nuclei in dinoflagellates and future perspectives as model organisms Takuro Nakayama; Kazuya Takahashi; Ryoma Kamikawa; Mitsunori Iwataki (+1 著者) Goro Tanifuji
      Communicative & Integrative Biology 13: 84 (2020) Semantic Scholar
  16. 16. Dinoflagellates with relic endosymbiont nuclei as models for elucidating organellogenesis Chihiro Sarai; Goro Tanifuji; Takuro Nakayama; Ryoma Kamikawa (+6 著者) Yuji Inagaki
      Proceedings of the National Academy of Sciences of the United States of America 117: (2020)
  17. 17. Large DNA virus promoted the endosymbiotic evolution to make a photosynthetic eukaryote Matsuo, Mitsuhiro; Katahata, Atsushi; Tchikawa, Makoto; Minakuchi, Yohei (+11 著者) Obokata, Junichi
      bioRχiv (2019) Semantic Scholar
  18. 18. Single-cell genomics unveiled a cryptic cyanobacterial lineage with a worldwide distribution hidden by a dinoflagellate host Takuro Nakayama; Mami Nomura; Yoshihito Takano; Goro Tanifuji (+3 著者) Masakado Kawata
      Proceedings of the National Academy of Sciences 116: 15973 (2019) Semantic Scholar
  19. 19. The draft genome of Kipferlia bialata reveals reductive genome evolution in fornicate parasites Goro Tanifuji; Shun Takabayashi; Keitaro Kume; Mizue Takagi (+3 著者) Tetsuo Hashimoto
      PLoS ONE 13: (2018) Semantic Scholar
  20. 20. Genomic divergence within non-photosynthetic cyanobacterial endosymbionts in rhopalodiacean diatoms Takuro Nakayama; Yuji Inagaki
      SCIENTIFIC REPORTS 7: 13075 (2017) Semantic Scholar
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  1. 1. 原生生物学事典 中山, 卓郎
    朝倉書店 2023年5月 (ISBN: 4254171811)

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