ホーム > 重田 育照/ Shigeta, Yasuteru
重田 育照
Shigeta, Yasuteru
計算科学研究センター , 教授 Center for Computational Sciences , Professor
http://www2.ccs.tsukuba.ac.jp/public/shigeta/shigeta_HP/Top_page.html
http://www2.ccs.tsukuba.ac.jp/people/shigeta/shigeta_personal/Message.html
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ISSM best paper
2024-12-10
上殿 明良 蓮沼 隆 重田 育照
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可逆性小児急性肝不全の発症機序の解明-治療薬開発に向けた道筋-
2023-12-27
重田 育照
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量子生命科学会第4回大会 優秀ポスター賞
2022-05-27
庄司 光男 堀 優太 重田 育照
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凝集したタンパク質を元に戻す分子Hsp104 の構造を解明
2021-05-11
重田 育照
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スーパーコンピュータを活用して「効く薬の候補」を素早く見つけ出す | 重田 育照
2021-04-01
重田 育照 広川 貴次 原田 隆平
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1兆分の1秒の時間分解能で液晶分子の動画を観測 -新しい測定・解析手法の確立
2018-02-13
重田 育照
オープンアクセス版の論文は「つくばリポジトリ」で読むことができます。
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1.
Enantioselective interactions of aminonitrile dimers
Natsuki Watanabe; Yu Komatsu; Koichi Miyagawa; Yuta Hori (+1 著者) Mitsuo Shoji
Physical Chemistry Chemical Physics (2025) Semantic Scholar
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2.
Rationally designed antimicrobial peptides with high selectivity and efficiency against phytopathogenic Ralstonia solanecearum
Melvalia Cristin Manik; Nitchakan Darai; Thanyada Rungrotmongkol; Lian Duan (+3 著者) Alisa S. Vangnai
Science of The Total Environment 976: 179354 (2025)
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3.
Structure and catalytic activity of a dihydrofolate reductase-like enzyme from Leptospira interrogans
Chandit, Charin; Hengphasatporn, Kowi; Donsuy, Pattraporn; Shigeta, YasuteruWangkanont, Kittikhun
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES 298: (2025)
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4.
Exploring mimosamycin as a Janus kinase 2 inhibitor: A combined computational and experimental investigation
Sanachai, Kamonpan; Hengphasatporn, Kowi; Chamni, Supakarn; Suwanborirux, Khani (+5 著者) Thanyada
COMPUTATIONAL BIOLOGY AND CHEMISTRY 115: (2025)
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5.
Pseudo[3]rotaxane and [3]Rotaxane of Per(5-carboxy-5-dehydroxymethyl)-Cyclodextrins Utilizing Carboxylic Acid Dimer as Recognition Units
Nakamura, Takashi; Kuwabara, Masamune; Zhang, Haoyang; Okazawa, Kazuki (+2 著者) Nabeshima, Tatsuya
The Journal of Organic Chemistry 90: 3603 (2025)
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6.
Apoprotein Intermolecular Interactions and Heme Insertion for 3D Domain Swapping in Myoglobin
Gissi Novientri; Koji Takeda; Lian Duan; Kowit Hengphasatporn (+3 著者) Shun Hirota
ACS Omega (2025)
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7.
Characterization of Delta-7 Alkenone Desaturase in Haptophyte Gephyrocapsa huxleyi Through Heterologous Expression in Tisochrysis lutea
Yoneda, Kohei; Kobayashi, Chinatsu; Araie, Hiroya; Morita, Rikuri (+4 著者) Suzuki, Iwane
MARINE BIOTECHNOLOGY 27: (2025)
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8.
Rational Design and Engineering of Conducting Polymers for Chemical Enhancement in Raman Scattering
Huanhuan Zhang; Jun Yu Dong; Xuke Tang; Naoki Kishimoto (+16 著者) Keisuke Goda
Advanced Optical Materials (2025)
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9.
Polysulfur-based bulking of dynamin-related protein 1 prevents ischemic sulfide catabolism and heart failure in mice
Nishimura, Akiyuki; Ogata, Seiryo; Tang, Xiaokang; Hengphasatporn, Kowi (+11 著者) Nishida, Motohiro
NATURE COMMUNICATIONS 16: 276 (2025)
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10.
Theoretical investigation of sustainable CO2 electroreduction to high-value products utilizing N-doped/BN-modified Triphenylene-Graphdiyne catalysts
Sirilak Kongkaew; Manussada Ratanasak; Yasuteru Shigeta; Jun-ya HasegawaVudhichai Parasuk
Fuel (2025) Semantic Scholar
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11.
Experimental and Computational Studies on Domain-Swapped Structure Stabilization of an Antibody Light Chain by Disulfide Bond Introduction.
Wahyu Fitriana; Takahiro Sakai; Lian Duan; Kowit Hengphasatporn (+4 著者) Shun Hirota
Journal of medicinal chemistry 67: 22313 (2024)
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12.
Structural Fluctuation in Homodimeric Aminoacyl-tRNA Synthetases Induces Half-of-the-Sites Activity
Yoshino Okamoto; Takunori Yasuda; Rikuri Morita; Yasuteru ShigetaRyuhei Harada
The Journal of Physical Chemistry B (2024) Semantic Scholar
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13.
GPNMB is a novel binding partner of FGFR1 that affects tumorigenic potential through AKT phosphorylation in TNBC
Elhinnawi; Manar A.; Okita, Yukari; Shigematsu, Katsunobu (+6 著者) Kato, Mitsuyasu
CANCER SCIENCE Epub: (2024) Semantic Scholar
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14.
Design, Synthesis, and Biological Evaluation of Darunavir Analogs as HIV-1 Protease Inhibitors
Muhammad Asad Ur Rehman; Hathaichanok Chuntakaruk; Soraat Amphan; Aphinya Suroengrit (+6 著者) Tanatorn Khotavivattana
ACS Bio & Med Chem Au (2024)
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15.
BEMM-GEN: A Toolkit for Generating a Biomolecular Environment-Mimicking Model for Molecular Dynamics Simulation
Takunori Yasuda; Rikuri Morita; Yasuteru Shigeta; Ryuhei Harada
Journal of Chemical Information and Modeling (2024) Semantic Scholar
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16.
Evaluating solubility, stability, and inclusion complexation of oxyresveratrol with various β-cyclodextrin derivatives using advanced computational techniques and experimental validation
Ali, Saba; Aman, Aamir; Hengphasatporn, Kowi; Oopkaew, Lipika (+10 著者) Thanyada
COMPUTATIONAL BIOLOGY AND CHEMISTRY 112: (2024) Semantic Scholar
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17.
Why is Dimeric 3D Domain Swapping in Antibody Light Chains Missing from the Solution? Atomistic Insights Mechanisms
Lian Duan; Kowit Hengphasatporn; Takahiro Sakai; Ryo Fujiki (+2 著者) Yasuteru Shigeta
The Journal of Physical Chemistry B (2024) Semantic Scholar
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18.
Rational Design of Cyclopentadiene-Based Super- and Hyperacids Based on Aromaticity
Mrinal Kanti Si; Yasuteru Shigeta
The Journal of Physical Chemistry A (2024) Semantic Scholar
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19.
A machine learning potential construction based on radial distribution function sampling
Natsuki Watanabe; Yuta Hori; Hiroki Sugisawa; Tomonori Ida (+1 著者) Yasuteru Shigeta
Journal of Computational Chemistry (2024) Semantic Scholar
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20.
Machine learning-based QSAR and LB-PaCS-MD guided design of SARS-CoV-2 main protease inhibitors
Toopradab, Borwornlak; Xie, Wanting; Duan, Lian; Hengphasatporn, Kowi (+6 著者) Thanyada
Bioorganic & medicinal chemistry letters 110: (2024) Semantic Scholar
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1.
Hydrogenomics: The Science of Fully Utilizing Hydrogen
Hori, Yuta; Nishikawa, Koji; Shigeta, Yasuteru; Higuchi, Yoshiki
共立出版 2023年4月
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2.
Recent advances of the fragment molecular orbital method Subtitle: Enhanced performance and applicability
Shigeta, Yasuteru
(担当:分担執筆, 範囲:AnalysisFMO toolkit: PyMOL plugin module to 3D-visualize interaction energies in protein (3D-VIEP) generated by fragment molecular orbital calculation)
Springer 2021年1月 (ISBN: 9789811592355)
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3.
Recent advances of the fragment molecular orbital method Subtitle: Enhanced performance and applicability
Shigeta, Yasuteru
(担当:分担執筆, 範囲:AnalysisFMO toolkit: PyMOL plugin module to 3D-visualize interaction energies in protein (3D-VIEP) generated by fragment molecular orbital calculation)
Springer 2021年1月 (ISBN: 9789811592355)
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4.
Advances in Quantum Chemistry
Shigeta, Yasuteru; Harada, Ryuhei
(担当:分担執筆, 範囲:Parallel Cascade Selection Molecular Dynamics Simulations for Transition Pathway Sampling of Biomolecules)
2019年1月
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5.
Quantum Systems in Physics, Chemistry, and Biology: Advances in Concepts and Applications
Baba, Takeshi; Kamiya, Katsumasa; Shigeta, Yasuteru
(担当:分担執筆, 範囲:Integrated Computational Studies on Mutational Effects of A Nylon-degrading Enzyme)
2017年6月 (ISBN: 9783319502540)
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6.
Reference modules in Materials Science and Engineering 2016
Harada, Ryuhei; Inagaki, Yuji; Shigeta, Yasuteru
(担当:分担執筆, 範囲:Protein Folding and Evolution)
2016年6月
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7.
金属錯体の量子・計算化学
重田,育照; 北河康隆
(担当:分担執筆, 範囲:第4-1章 錯体の伝導性)
2014年10月
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8.
Quantum mechanics Chap. 17
Shigeta,Yasuteru
(担当:分担執筆, 範囲:Quantal Cumulant Mechanics as Extended Ehrenfest Theorem)
InTech open 2013年4月
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9.
Conceptual and Computational Advances in Quantum Chemistry, Chap. 25
Shigeta,Yasuteru
(担当:分担執筆, 範囲:Theoretical Studies on Metal-Containing Artificial DNA Bases”, Advances in the Theory of Atomic and Molecular Systems)
Springer 2012年10月
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10.
Advances in the Theory of Atomic and Molecular Systems, Conceptual and Computational Advances in Quantum Chemistry, Chap. 21
Shigeta,Yasuteru
(担当:分担執筆, 範囲:Quantum Theory in Terms of Cumulant Variables)
Springer 2009年10月
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11.
ADVANCES IN THE THEORY OF ATOMIC AND MOLECULAR SYSTEMS: DYNAMICS, SPECTROSCOPY, CLUSTERS, AND NANOSTRUCTURES
Shigeta, Yasuteru; Miyachi, Hideaki; Matsui, Toru; Yokoyama, Norisuke; Hirao, Kimihiko
(担当:分担執筆, 範囲:Quantum Theory in Terms of Cumulant Variables)
SPRINGER 2009年1月 (ISBN: 9789048129843)
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12.
Challenges and Advances in Computational Chemistry and Physics, Chap. 2
Shigeta,Yasuteru
(担当:分担執筆, 範囲:Single-Reference Methods for Excited States in Molecules and Polymers)
Springer 2008年10月
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13.
物性量子化学入門
重田,育照
(担当:分担執筆, 範囲:第13、14章)
講談社 2004年9月
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141.
Theoretical study for the active site in oxidized [NiFe]-hydrogenase
堀, 優太; 佐藤, 綾香; 重田, 育照
The 5th conference of Theory and Applications of Computational Chemistry (TACC2023)
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142.
星間空間におけるホモキラリティー発生の理論的研究
堀, 優太; 渡辺, 七都稀; 庄司, 光男; 重田, 育照
第17回分子科学討論会
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143.
Characterization of the electronic and geometrical structures and the formation pathway in oxidized [NiFe]-hydrogenase
Hori, Yuta; Shigeta, Yasuteru
17th International Congress of Quantum Chemistry
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144.
Cancer-Specific Sialylation Of Glycoprotein Nonmetastatic Melanoma Protein B Interact With Tumor-Associated Macrophage in Triple-Negative Breast Carcinoma via Siglec-9
Dang, Cao Thuy Linh Linda; Kunio, Kawanishi; Yukari, Okita; Yukihide, Watanabe; Sachie, Hashimoto; Kowit, Hengphasatporn; Chiaki, Nagai-Okatani; Mohammed, ِAbdel-Aziz; Rie, Shiratani; Thanasis, Poullikkas; Nuriza, Ulul Azmi; Hiroko, Bando; Yasuteru, Shigeta; Atsushi, Kuno; and; Mitsuyasu Kato
the 26th International Glycoconjugate Symposium (IGS)
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145.
Hevin/Sparcl1の変異によるASD病態形成への新たな洞察
武富巧; 保田拓範; 森田陸離; 原田隆平; 重田育照; 水野聖哉; 高橋智; 鶴田文憲
第46回日本神経科学大会
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146.
ヘモグロビンM IwateとM BostonのFe-O伸縮振動の理論計算の改良およびヘモグロビンAとの構造の比較
長友重紀; 寺田拓人; 庄司光男; 重田育照; 中谷清治; 廣田俊; 柳澤幸子; 久保稔; 北川禎三; 長井雅子; 大木規央; 朴三用; 柴山修哉
第49回生体分子科学討論会 第49回生体分子科学討論会実行委員会
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147.
高電位鉄硫黄タンパク質の活性中心の電子状態及び構造と周囲のアミノ酸からの影響の理論解析
佐藤, 綾香; 堀, 優太; 重田, 育照
量子生命科学会第5回大会
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148.
酸化型[NiFe]ヒドロゲナーゼの生成過程と活性中心の構造についての理論解析
堀, 優太; 佐藤, 綾香; 重田, 育照
量子生命科学会第5回大会
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149.
還元型高電位鉄硫黄タンパク質の鉄硫黄クラスターの電子状態と周囲のアミノ酸が与える影響
堀, 優太; 佐藤, 綾香; 重田, 育照
第25回理論化学討論会
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150.
タンパク質の構造機能-相関に対する計算科学的研究?応用篇?
重田, 育照
生命金属科学 夏の合宿 招待有り
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151.
The mechanism of ASD-associated Sparcl1/Hevin mutant underlying pathogenesis
武富, 巧; 保田, 拓範; 森田, 陸離; 重田, 育照; 原田, 隆平; 鶴田, 文憲
第16回神経発生討論会
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152.
ASD-associated SPARCL1 mutant accumulates in the endoplasmic reticulum: implication for a novel mechanism underlying ASD pathogenesis
Taketomi, Takumi; Yasuda, Takunori; Morita, Rikuri; Shigeta, Yasuteru; Mizuno, Seiya; Takahashi, Satoru; Harada, Ryuhei; Tsuruta, Fuminori
36th International mammalian Genome society
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153.
化合物の膜透過プロセスを紐解く自由エネルギー計算手法の開発
原田, 隆平; 森田, 陸離; 重田, 育照
第50回 構造活性相関シンポジウム
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154.
Molecular Dynamics Simulation Reveals Structural Variations of Metallothionein with or without Zinc Ions
Morita, Rikuri; Shigeta, Yasuteru; Harada, Ryuhei
The 8th International Symposium on Metallomics
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155.
中分子の膜透過性に対する計算手法の検討
高橋, 輝行; HENGPHASATPORN; KOWIT; 原田, 隆平; 重田, 育照
日本コンピューター化学会 2022年 秋季年会
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156.
Enhanced Samplingにおける構造妥当性の評価は外部バイアスを適切に制御する
保田, 拓範; 森田, 陸離; 重田, 育照; 原田, 隆平
第36回 分子シミュレーション討論会
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157.
A Computational Study on the Half-Site Activity Mechanism of Homodimeric Tyrosyl tRNA Synthetase
Okamoto, Yoshino; Yasuda, Takunori; Morita, Rikuri; Shigeta, Yasuteru; Harada, Ryuhei
The 60th Annual Meeting of the Biophysical Society of Japan
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158.
LogP-corrected Membrane Docking Score Screens Protein-Ligand-Membrane Complexes
Morita, Rikuri; Shigeta, Yasuteru; Harada, Ryuhei
The 60th Annual Meeting of the Biophysical Society of Japan
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159.
Structural Validation by the G-factor Properly Regulates Boost Potentials Imposed in Conformational Sampling of Proteins
Yasuda, Takunori; Morita, Rikuri; Shigeta, Yasuteru; Harada, Ryuhei
The 60th Annual Meeting of the Biophysical Society of Japan
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160.
QM/MMによる酵素反応解析
重田, 育照
計算生命科学の基礎9~生命科学のためのシミュレーション技術とデータサイエンス:AI技術の融合、そして医療・創薬への応用まで~ 招待有り
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1. 15/228,873: Information Processing Apparatus and Simulation Method
重田, 育照 -
2. 15/228,540: Information Processing Apparatus and Simulation Method
重田,育照 -
3. 2015-156703: 情報処理装置、指標次元抽出方法、および指標次元抽出プログラム
重田,育照 -
4. 2015-156702: 情報処理装置、シミュレーション方法、およびシミュレーションプログ 2. ラム
重田,育照 -
5. 2015-032321: 情報処理、シミュレーションプログラムおよびシミュレーション方法
重田,育照
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